Publications

Authorship

In accordance with ABRF’S Authorship Guidelines, we request co-authorship if we have developed tools, algorithms, or pipelines, participated in experiment design, or contributed to a biological question addressed in a manuscript.

For all projects sequenced and analyzed by our core facility, we request, at minimum, you acknowledge us in a publication to which we have contributed routine analysis, or data management and storage.

  • Yu X, Buck MJ. Pioneer factors and their in vitro identification methods. Mol Genet Genomics. 2020;295(4):825-35. Epub 2020/04/17. doi: 10.1007/s00438-020-01675-9. PubMed PMID: 32296927.
  • Wu F, Bard JE, Kann J, Yergeau D, Sapkota D, Ge Y, Hu Z, Wang J, Liu T, Mu X. RNA-seq and scRNA-seq reveal trajectory progression of the retinal ganglion cell lineage in wild-type and Atoh7-null retinas. bioRxiv. 2020.
  • Tsompana M, Gluck C, Sethi I, Joshi I, Bard J, Nowak NJ, Sinha S, Buck MJ. Reactivation of super-enhancers by KLF4 in human Head and Neck Squamous Cell Carcinoma. Oncogene. 2020;39(2):262-77. Epub 2019/09/04. doi: 10.1038/s41388-019-0990-4. PubMed PMID: 31477832.
  • Smith RJ, Jr., Nasiri B, Kann J, Yergeau D, Bard JE, Swartz DD, Andreadis ST. Endothelialization of arterial vascular grafts by circulating monocytes. Nature communications. 2020;11(1):1622. Epub 2020/04/03. doi: 10.1038/s41467-020-15361-2. PubMed PMID: 32238801; PMCID: PMC7113268 authors declare no competing interests.
  • Rein B, Tan T, Yang F, Wang W, Williams J, Zhang F, Mills A, Yan Z. Reversal of synaptic and behavioral deficits in a 16p11.2 duplication mouse model via restoration of the GABA synapse regulator Npas4. Mol Psychiatry. 2020. Epub 2020/02/27. doi: 10.1038/s41380-020-0693-9. PubMed PMID: 32099100.
  • Mu X, Ge Y, Wu F, Bard J, Kann J, Yergeau D, Sapkota D, Hu Z, Liu T. Investigating the developmental trajectory of retinal ganglion cells by scRNA-seq and and scATAC-seq. Investigative Ophthalmology & Visual Science. 2020;61(7):4018-.
  • Lamb NA, Bard J, Buck MJ, Surtees JA. Targeted Next Generation Sequencing in Saccharomyces cerevisiae Reveals Complex Mutation Profiles in the Presence of Mismatch Repair and Ribonucleotide Reductase Mutations that Compromise the Fidelity of DNA Replication. bioRxiv. 2020.
  • Boyle KK, Marzullo BJ, Yergeau DA, Nodzo SR, Crane JK, Duquin TR. Pathogenic Genetic Variations of C. acnesare Associated with Clinically Relevant Orthopedic Shoulder Infections. Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2020. Epub 2020/07/10. doi: 10.1002/jor.24798. PubMed PMID: 32644213.
  • Zheng Y, Liu A, Wang ZJ, Cao Q, Wang W, Lin L, Ma K, Zhang F, Wei J, Matas E, Cheng J, Chen GJ, Wang X, Yan Z. Inhibition of EHMT1/2 rescues synaptic and cognitive functions for Alzheimer’s disease. Brain. 2019;142(3):787-807. Epub 2019/01/23. doi: 10.1093/brain/awy354. PubMed PMID: 30668640; PMCID: PMC6391616.
  • Yu X, Buck MJ. Defining TP53 pioneering capabilities with competitive nucleosome binding assays. Genome Res. 2019;29(1):107-15. Epub 2018/11/10. doi: 10.1101/gr.234104.117. PubMed PMID: 30409772; PMCID: PMC6314159.
  • Tylec BL, Simpson RM, Kirby LE, Chen R, Sun Y, Koslowsky DJ, Read LK. Intrinsic and regulated properties of minimally edited trypanosome mRNAs. Nucleic Acids Res. 2019;47(7):3640-57. Epub 2019/01/31. doi: 10.1093/nar/gkz012. PubMed PMID: 30698753; PMCID: PMC6468165.
  • Sabharwal A, Ganley K, Miecznikowski JC, Haase EM, Barnes V, Scannapieco FA. The salivary microbiome of diabetic and non-diabetic adults with periodontal disease. Journal of periodontology. 2019;90(1):26-34. Epub 2018/07/13. doi: 10.1002/jper.18-0167. PubMed PMID: 29999529.
  • Oyelakin A, Song EAC, Min S, Bard JE, Kann JV, Horeth E, Smalley K, Kramer JM, Sinha S, Romano RA. Transcriptomic and Single-Cell Analysis of the Murine Parotid Gland. J Dent Res. 2019;98(13):1539-47. Epub 2019/10/19. doi: 10.1177/0022034519882355. PubMed PMID: 31623513; PMCID: PMC6873284.
  • Li H, Jiang H, Yin X, Bard JE, Zhang B, Feng J. Attenuation of PRRX2 and HEY2 enables efficient conversion of adult human skin fibroblasts to neurons. Biochemical and biophysical research communications. 2019;516(3):765-9. Epub 2019/07/01. doi: 10.1016/j.bbrc.2019.06.089. PubMed PMID: 31255287; PMCID: PMC6646072.
  • Kiripolsky J, Romano RA, Kasperek EM, Yu G, Kramer JM. Activation of Myd88-Dependent TLRs Mediates Local and Systemic Inflammation in a Mouse Model of Primary Sjögren’s Syndrome. Front Immunol. 2019;10:2963. Epub 2020/01/30. doi: 10.3389/fimmu.2019.02963. PubMed PMID: 31993047; PMCID: PMC6964703.
  • Gordon JH, LaMonte MJ, Genco RJ, Zhao J, Li L, Hovey KM, Tsompana M, Buck MJ, Andrews CA, McSkimming DI, Zheng W, Sun Y, Wactawski-Wende J. Is the Oral Microbiome Associated with Blood Pressure in Older Women? High blood pressure & cardiovascular prevention : the official journal of the Italian Society of Hypertension. 2019;26(3):217-25. Epub 2019/06/27. doi: 10.1007/s40292-019-00322-8. PubMed PMID: 31236901; PMCID: PMC6610722.
  • Gluck C, Glathar A, Tsompana M, Nowak N, Garrett-Sinha LA, Buck MJ, Sinha S. Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma. PLoS genetics. 2019;15(7):e1008250. Epub 2019/07/16. doi: 10.1371/journal.pgen.1008250. PubMed PMID: 31306413; PMCID: PMC6657958.
  • Cejas RB, Ferguson DC, Quiñones-Lombraña A, Bard JE, Blanco JG. Contribution of DNA methylation to the expression of FCGRT in human liver and myocardium. Scientific reports. 2019;9(1):8674. Epub 2019/06/19. doi: 10.1038/s41598-019-45203-1. PubMed PMID: 31209240; PMCID: PMC6572836.
  • Brady SW, Ma X, Bahrami A, Satas G, Wu G, Newman S, Rusch M, Putnam DK, Mulder HL, Yergeau DA, Edmonson MN, Easton J, Alexandrov LB, Chen X, Mardis ER, Wilson RK, Downing JR, Pappo AS, Raphael BJ, Dyer MA, Zhang J. The Clonal Evolution of Metastatic Osteosarcoma as Shaped by Cisplatin Treatment. Molecular cancer research : MCR. 2019;17(4):895-906. Epub 2019/01/18. doi: 10.1158/1541-7786.mcr-18-0620. PubMed PMID: 30651371.
  • Bloom ALM, Jin RM, Leipheimer J, Bard JE, Yergeau D, Wohlfert EA, Panepinto JC. Thermotolerance in the pathogen Cryptococcus neoformans is linked to antigen masking via mRNA decay-dependent reprogramming. Nature communications. 2019;10(1):4950. Epub 2019/11/02. doi: 10.1038/s41467-019-12907-x. PubMed PMID: 31666517; PMCID: PMC6821889.
  • Belin S, Ornaghi F, Shackleford G, Wang J, Scapin C, Lopez-Anido C, Silvestri N, Robertson N, Williamson C, Ishii A, Taveggia C, Svaren J, Bansal R, Schwab MH, Nave K, Fratta P, D’Antonio M, Poitelon Y, Feltri ML, Wrabetz L. Neuregulin 1 type III improves peripheral nerve myelination in a mouse model of congenital hypomyelinating neuropathy. Hum Mol Genet. 2019. doi: 10.1093/hmg/ddz021. PubMed PMID: 30668730.
  • Zhang Y, Yang J, Bai G. Regulation of the CRISPR-associated genes by Rv2837c (CnpB) via an Orn-like activity in TB complex mycobacteria. J Bacteriol. 2018. doi: 10.1128/JB.00743-17. PubMed PMID: 29378893; PMCID: PMC5869477.
  • Wang J, Saraswat D, Sinha AK, Polanco J, Dietz K, O’Bara MA, Pol SU, Shayya HJ, Sim FJ. Paired Related Homeobox Protein 1 Regulates Quiescence in Human Oligodendrocyte Progenitors. Cell Rep. 2018;25(12):3435-50 e6. doi: 10.1016/j.celrep.2018.11.068. PubMed PMID: 30566868.
  • Tutino VM, Poppenberg KE, Li L, Shallwani H, Jiang K, Jarvis JN, Sun Y, Snyder KV, Levy EI, Siddiqui AH, Kolega J, Meng H. Biomarkers from circulating neutrophil transcriptomes have potential to detect unruptured intracranial aneurysms. J Transl Med. 2018;16(1):373. doi: 10.1186/s12967-018-1749-3. PubMed PMID: 30593281; PMCID: PMC6310942.
  • Tutino VM, Poppenberg KE, Jiang K, Jarvis JN, Sun Y, Sonig A, Siddiqui AH, Snyder KV, Levy EI, Kolega J, Meng H. Circulating neutrophil transcriptome may reveal intracranial aneurysm signature. PloS one. 2018;13(1):e0191407. doi: 10.1371/journal.pone.0191407. PubMed PMID: 29342213; PMCID: PMC5771622.
  • Toffolo K, Osei J, Kelly W, Poulsen A, Donahue K, Wang J, Hunter M, Bard J, Wang J, Poulsen D. Circulating MicroRNAs as Biomarkers in Traumatic Brain Injury. Neuropharmacology. 2018. Epub 2018/09/10. doi: 10.1016/j.neuropharm.2018.08.028. PubMed PMID: 30195586.
  • Song EC, Min S, Oyelakin A, Smalley K, Bard JE, Liao L, Xu J, Romano RA. Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance. Scientific reports. 2018;8(1):14043. Epub 2018/09/21. doi: 10.1038/s41598-018-32343-z. PubMed PMID: 30232460.
  • Seldeen KL, Pang M, Leiker MM, Bard JE, Rodriguez-Gonzalez M, Hernandez M, Sheridan Z, Nowak N, Troen BR. Chronic vitamin D insufficiency impairs physical performance in C57BL/6J mice. Aging. 2018;10(6):1338-55. Epub 2018/06/16. doi: 10.18632/aging.101471. PubMed PMID: 29905532; PMCID: PMC6046224.
  • Qin L, Ma K, Wang ZJ, Hu Z, Matas E, Wei J, Yan Z. Social deficits in Shank3-deficient mouse models of autism are rescued by histone deacetylase (HDAC) inhibition. Nature neuroscience. 2018;21(4):564-75. Epub 2018/03/14. doi: 10.1038/s41593-018-0110-8. PubMed PMID: 29531362; PMCID: PMC5876144.
  • Pettigrew MM, Ahearn CP, Gent JF, Kong Y, Gallo MC, Munro JB, D’Mello A, Sethi S, Tettelin H, Murphy TF. Haemophilus influenzae genome evolution during persistence in the human airways in chronic obstructive pulmonary disease. Proceedings of the National Academy of Sciences of the United States of America. 2018;115(14):E3256-e65. Epub 2018/03/21. doi: 10.1073/pnas.1719654115. PubMed PMID: 29555745; PMCID: PMC5889651.
  • Osei J, Kelly W, Toffolo K, Donahue K, Levy B, Bard J, Wang J, Levy E, Nowak N, Poulsen D. Thymosin beta 4 induces significant changes in the plasma miRNA profile following severe traumatic brain injury in the rat lateral fluid percussion injury model. Expert opinion on biological therapy. 2018;18(sup1):159-64. Epub 2018/06/07. doi: 10.1080/14712598.2018.1484102. PubMed PMID: 29873258.
  • Nesher E, Safina A, Aljahdali I, Portwood S, Wang ES, Koman I, Wang J, Gurova KV. Role of Chromatin Damage and Chromatin Trapping of FACT in Mediating the Anticancer Cytotoxicity of DNA-Binding Small-Molecule Drugs. Cancer research. 2018;78(6):1431-43. Epub 2018/01/18. doi: 10.1158/0008-5472.can-17-2690. PubMed PMID: 29339544; PMCID: PMC5856628.
  • McCall AD, Kumar R, Edgerton M. Candida albicans Sfl1/Sfl2 regulatory network drives the formation of pathogenic microcolonies. PLoS pathogens. 2018;14(9):e1007316. Epub 2018/09/27. doi: 10.1371/journal.ppat.1007316. PubMed PMID: 30252918; PMCID: PMC6173444.
  • McAdams NM, Simpson RM, Chen R, Sun Y, Read LK. MRB7260 is essential for productive protein-RNA interactions within the RNA editing substrate binding complex during trypanosome RNA editing. RNA. 2018;24(4):540-56. doi: 10.1261/rna.065169.117. PubMed PMID: 29330168; PMCID: PMC5855954.
  • Mashima I, Liao Y-C, Sabharwal A, Haase EM, Nakazawa F, Scannapieco FA. Draft Genome Sequences of Four Strains of Recently Established Novel Veillonella Species Isolated from Human Oral Cavities. Genome Announcements. 2018;6(15):e00259-18. doi: 10.1128/genomeA.00259-18.
  • Martin JA, Caccamise A, Werner CT, Viswanathan R, Polanco JJ, Stewart AF, Thomas SA, Sim FJ, Dietz DM. A Novel Role for Oligodendrocyte Precursor Cells (OPCs) and Sox10 in Mediating Cellular and Behavioral Responses to Heroin. Neuropsychopharmacology. 2018;43(6):1385-94. doi: 10.1038/npp.2017.303. PubMed PMID: 29260792; PMCID: PMC5916371.
  • Kumar S, Wilkes DW, Samuel N, Blanco MA, Nayak A, Alicea-Torres K, Gluck C, Sinha S, Gabrilovich D, Chakrabarti R. DeltaNp63-driven recruitment of myeloid-derived suppressor cells promotes metastasis in triple-negative breast cancer. J Clin Invest. 2018;128(11):5095-109. doi: 10.1172/JCI99673. PubMed PMID: 30295647; PMCID: PMC6205409.
  • Jin RM, Warunek J, Wohlfert EA. Chronic infection stunts macrophage heterogeneity and disrupts immune-mediated myogenesis. JCI insight. 2018;3(18). Epub 2018/09/21. doi: 10.1172/jci.insight.121549. PubMed PMID: 30232283; PMCID: PMC6237226.
  • Jiang K, Poppenberg KE, Wong L, Chen Y, Borowitz D, Goetz D, Sheehan D, Frederick C, Tutino VM, Meng H, Jarvis JN. RNA sequencing data from neutrophils of patients with cystic fibrosis reveals potential for developing biomarkers for pulmonary exacerbations. Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society. 2018. Epub 2018/06/27. doi: 10.1016/j.jcf.2018.05.014. PubMed PMID: 29941318; PMCID: PMC6309595.
  • Isackson PJ, Wang J, Zia M, Spurgeon P, Levesque A, Bard J, James S, Nowak N, Lee TK, Vladutiu GD. RYR1 and CACNA1S genetic variants identified with statin-associated muscle symptoms. Pharmacogenomics. 2018;19(16):1235-49. Epub 2018/10/17. doi: 10.2217/pgs-2018-0106. PubMed PMID: 30325262.
  • Gong Z, Wang J, Wang D, Buas MF, Ren X, Freudenheim J, Belinsky SA, Liu S, Ambrosone CB, Higgins MJ. Differences in microRNA expression in breast cancer between women of African and European ancestry. Carcinogenesis. 2018. doi: 10.1093/carcin/bgy134. PubMed PMID: 30321299.
  • Ganapathi M, Boles NC, Charniga C, Lotz S, Campbell M, Temple S, Morse RH. Effect of Bmi1 over-expression on gene expression in adult and embryonic murine neural stem cells. Scientific reports. 2018;8(1):7464. Epub 2018/05/12. doi: 10.1038/s41598-018-25921-8. PubMed PMID: 29749381; PMCID: PMC5945652.
  • Fan X, Wang D, Burgmaier JE, Teng Y, Romano RA, Sinha S, Yi R. Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin. Dev Cell. 2018;47(1):133. doi: 10.1016/j.devcel.2018.09.019. PubMed PMID: 30300587.
  • Cooper LA, Stringer AM, Wade JT. Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation In Vivo in the Escherichia coli Type I-E CRISPR-Cas System. mBio. 2018;9(2). Epub 2018/04/19. doi: 10.1128/mBio.02100-17. PubMed PMID: 29666291; PMCID: PMC5904413.
  • Chatterjee A, O’Brian MR. Rapid evolution of a bacterial iron acquisition system. Mol Microbiol. 2018;108(1):90-100. doi: 10.1111/mmi.13918. PubMed PMID: 29381237; PMCID: PMC5867251.
  • Batool M, Caoili SEC, Dangott LJ, Gerasimov E, Ionov Y, Piontkivska H, Zelikovsky A, Waghela SD, Rogovskyy AS. Identification of Surface Epitopes Associated with Protection against Highly Immune-Evasive VlsE-Expressing Lyme Disease Spirochetes. Infect Immun. 2018;86(8). doi: 10.1128/IAI.00182-18. PubMed PMID: 29866906; PMCID: PMC6056884.
  • Banack HR, Genco RJ, LaMonte MJ, Millen AE, Buck MJ, Sun Y, Andrews CA, Hovey KM, Tsompana M, McSkimming DI, Zhao J, Wactawski-Wende J. Cohort profile: the Buffalo OsteoPerio microbiome prospective cohort study. BMJ open. 2018;8(12):e024263. Epub 2018/12/07. doi: 10.1136/bmjopen-2018-024263. PubMed PMID: 30518590; PMCID: PMC6286477.
  • Zhu L, Jiang K, Webber K, Wong L, Liu T, Chen Y, Jarvis JN. Chromatin landscapes and genetic risk for juvenile idiopathic arthritis. Arthritis Research & Therapy. 2017;19:57. doi: 10.1186/s13075-017-1260-x. PubMed PMID: PMC5348874.
  • Zhu J, Wang J, Chen X, Tsompana M, Gaile D, Buck M, Ren X. A Time-Series Analysis of Altered Histone H3 Acetylation and Gene Expression during the Course of MMAIII-Induced Malignant Transformation of Urinary Bladder Cells. Carcinogenesis. 2017. Epub 2017/02/10. doi: 10.1093/carcin/bgx011. PubMed PMID: 28182198.
  • Yacoub R, Nugent M, Cai W, Nadkarni GN, Chaves LD, Abyad S, Honan AM, Thomas SA, Zheng W, Valiyaparambil SA, Bryniarski MA, Sun Y, Buck M, Genco RJ, Quigg RJ, He JC, Uribarri J. Advanced glycation end products dietary restriction effects on bacterial gut microbiota in peritoneal dialysis patients; a randomized open label controlled trial. PloS one. 2017;12(9):e0184789. Epub 2017/09/21. doi: 10.1371/journal.pone.0184789. PubMed PMID: 28931089; PMCID: PMC5607175.
  • Simpson RM, Bruno AE, Chen R, Lott K, Tylec BL, Bard JE, Sun Y, Buck MJ, Read LK. Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization. Nucleic Acids Res. 2017;45(13):7965-83. Epub 2017/05/24. doi: 10.1093/nar/gkx458. PubMed PMID: 28535252; PMCID: PMC5737529.
  • Sethi I, Gluck C, Zhou H, Buck MJ, Sinha S. Evolutionary re-wiring of p63 and the epigenomic regulatory landscape in keratinocytes and its potential implications on species-specific gene expression and phenotypes. Nucleic Acids Res. 2017;45(14):8208-24. doi: 10.1093/nar/gkx416. PubMed PMID: 28505376; PMCID: PMC5737389.
  • Saelee P, Kearly A, Nutt SL, Garrett-Sinha LA. Genome-Wide Identification of Target Genes for the Key B Cell Transcription Factor Ets1. Front Immunol. 2017;8:383. doi: 10.3389/fimmu.2017.00383. PubMed PMID: 28439269; PMCID: PMC5383717.
  • Rogovskyy AS, Gillis DC, Ionov Y, Gerasimov E, Zelikovsky A. Antibody Response to Lyme Disease Spirochetes in the Context of VlsE-Mediated Immune Evasion. Infect Immun. 2017;85(1). doi: 10.1128/IAI.00890-16. PubMed PMID: 27799330; PMCID: PMC5203654.
  • Narla ST, Lee YW, Benson CA, Sarder P, Brennand KJ, Stachowiak EK, Stachowiak MK. Common developmental genome deprogramming in schizophrenia – Role of Integrative Nuclear FGFR1 Signaling (INFS). Schizophrenia research. 2017. Epub 2017/01/18. doi: 10.1016/j.schres.2016.12.012. PubMed PMID: 28094170.
  • Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD. Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes. PloS one. 2017;12(3):e0172647. doi: 10.1371/journal.pone.0172647.
  • Hefti E, Bard J, Blanco JG. Analysis of Heteroplasmic Variants in the Cardiac Mitochondrial Genome of Individuals with Down Syndrome. Human mutation. 2017;38(1):48-54. Epub 2016/09/07. doi: 10.1002/humu.23071. PubMed PMID: 27594409; PMCID: PMC5154832.
  • Chattopadhyay I, Wang J, Qin M, Gao L, Holtz R, Vessella RL, Leach RW, Gelman IH. Src promotes castration-recurrent prostate cancer through androgen receptor-dependent canonical and non-canonical transcriptional signatures. Oncotarget. 2017;8(6):10324-47. doi: 10.18632/oncotarget.14401. PubMed PMID: PMC5354662.
  • Becking T, Giraud I, Raimond M, Moumen B, Chandler C, Cordaux R, Gilbert C. Diversity and evolution of sex determination systems in terrestrial isopods. Scientific Reports. 2017;7(1):1084. doi: 10.1038/s41598-017-01195-4.
  • Bajpai VK, Kerosuo L, Tseropoulos G, Cummings KA, Wang X, Lei P, Liu B, Liu S, Popescu GK, Bronner ME, Andreadis ST. Reprogramming Postnatal Human Epidermal Keratinocytes Toward Functional Neural Crest Fates. STEM CELLS. 2017;35(5):1402-15. doi: 10.1002/stem.2583.
  • Yang S, Cai Q, Vethanayagam RR, Wang J, Yang W, Hu BH. Immune defense is the primary function associated with the differentially expressed genes in the cochlea following acoustic trauma. Hearing research. 2016;333:283-94. Epub 2015/11/02. doi: 10.1016/j.heares.2015.10.010. PubMed PMID: 26520584; PMCID: PMC4798880.
  • Tylee DS, Espinoza AJ, Hess JL, Tahir MA, McCoy SY, Rim JK, Dhimal T, Cohen OS, Glatt SJ. RNA sequencing of transformed lymphoblastoid cells from siblings discordant for autism spectrum disorders reveals transcriptomic and functional alterations: Evidence for sex-specific effects. Autism research : official journal of the International Society for Autism Research. 2016. Epub 2016/08/17. doi: 10.1002/aur.1679. PubMed PMID: 27529825.
  • Tomov ML, Olmsted ZT, Dogan H, Gongorurler E, Tsompana M, Otu HH, Buck M, Chang EA, Cibelli J, Paluh JL. Distinct and Shared Determinants of Cardiomyocyte Contractility in Multi-Lineage Competent Ethnically Diverse Human iPSCs. Scientific reports. 2016;6:37637. Epub 2016/12/06. doi: 10.1038/srep37637. PubMed PMID: 27917881; PMCID: PMC5137163.
  • Smith C, Stringer AM, Mao C, Palumbo MJ, Wade JT. Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion. mBio. 2016;7(5). Epub 2016/09/08. doi: 10.1128/mBio.01024-16. PubMed PMID: 27601571; PMCID: PMC5013294.
  • Singh N, Bubunenko M, Smith C, Abbott DM, Stringer AM, Shi R, Court DL, Wade JT. SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli. mBio. 2016;7(2):e00114. Epub 2016/03/17. doi: 10.1128/mBio.00114-16. PubMed PMID: 26980831; PMCID: PMC4807359.
  • Simpson RM, Bruno AE, Bard JE, Buck MJ, Read LK. High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing. Rna. 2016;22(5):677-95. Epub 2016/02/26. doi: 10.1261/rna.055160.115. PubMed PMID: 26908922; PMCID: PMC4836643.
  • Shandilya J, Gao Y, Nayak TK, Roberts SGE, Medler KF. AP1 transcription factors are required to maintain the peripheral taste system. Cell Death & Disease. 2016;7(10):e2433. doi: 10.1038/cddis.2016.343. PubMed PMID: PMC5133999.
  • Sankari S, O’Brian MR. The Bradyrhizobium japonicum Ferrous Iron Transporter FeoAB Is Required for Ferric Iron Utilization in Free Living Aerobic Cells and for Symbiosis. The Journal of biological chemistry. 2016;291(30):15653-62. Epub 2016/06/12. doi: 10.1074/jbc.M116.734129. PubMed PMID: 27288412; PMCID: PMC4957049.
  • Rizzo JM, Oyelakin A, Min S, Smalley K, Bard J, Luo W, Nyquist J, Guttman-Yassky E, Yoshida T, De Benedetto A, Beck LA, Sinha S, Romano RA. DeltaNp63 regulates IL-33 and IL-31 signaling in atopic dermatitis. Cell death and differentiation. 2016;23(6):1073-85. Epub 2016/01/16. doi: 10.1038/cdd.2015.162. PubMed PMID: 26768665; PMCID: PMC4987726.
  • Hui-Yuen JS, Zhu L, Wong LP, Jiang K, Chen Y, Liu T, Jarvis JN. Chromatin landscapes and genetic risk in systemic lupus. Arthritis research & therapy. 2016;18(1):281. Epub 2016/12/03. doi: 10.1186/s13075-016-1169-9. PubMed PMID: 27906046; PMCID: PMC5134118.
  • Gluck C, Min S, Oyelakin A, Smalley K, Sinha S, Romano RA. RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. BMC genomics. 2016;17(1):923. Epub 2016/11/18. doi: 10.1186/s12864-016-3228-7. PubMed PMID: 27852218; PMCID: PMC5112738.
  • Zheng W, Tsompana M, Ruscitto A, Sharma A, Genco R, Sun Y, Buck MJ. An accurate and efficient experimental approach for characterization of the complex oral microbiota. Microbiome. 2015;3(1):48. doi: 10.1186/s40168-015-0110-9.
  • Yang S, Cai Q, Bard J, Jamison J, Wang J, Yang W, Hu BH. Variation analysis of transcriptome changes reveals cochlear genes and their associated functions in cochlear susceptibility to acoustic overstimulation. Hearing research. 2015;330(0 0):78-89. doi: 10.1016/j.heares.2015.04.010. PubMed PMID: PMC4662632.
  • Wang J, Rennie W, Liu C, Carmack CS, Prevost K, Caron MP, Masse E, Ding Y, Wade JT. Identification of bacterial sRNA regulatory targets using ribosome profiling. Nucleic Acids Res. 2015;43(21):10308-20. Epub 2015/11/08. doi: 10.1093/nar/gkv1158. PubMed PMID: 26546513; PMCID: PMC4666370.
  • Tsompana M, Valiyaparambil S, Bard J, Marzullo B, Nowak N, Buck MJ. An automated method for efficient, accurate and reproducible construction of RNA-seq libraries. BMC Research Notes. 2015;8:124. doi: 10.1186/s13104-015-1089-9. PubMed PMID: PMC4391147.
  • Terranova C, Narla ST, Lee Y-W, Bard J, Parikh A, Stachowiak EK, Tzanakakis ES, Buck MJ, Birkaya B, Stachowiak MK. Global Developmental Gene Programing Involves a Nuclear Form of Fibroblast Growth Factor Receptor-1 (FGFR1). PloS one. 2015;10(4):e0123380. doi: 10.1371/journal.pone.0123380. PubMed PMID: PMC4414453.
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